species:   Cocin
pid:       PID1283
parent:    cci-milR-28
paralog:   
locus:     scaffold_392:9771-9828
matures:   ['UAGGAUUCGACGAUGGCG', 'CCAAUGUUGAACCCUAGAUCGC']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_392:9771-9828

4 out of bounds
5 alignments
1 proper strand
1 stranded perfect matches

*******************             ************************* 
UAGGAUUCGACGAUGGCGAGAGGGACCUGCCUCGUCCAAUGUUGAACCCUAGAUCGCU
((((.(((((((.(((...((((......))))..))).))))))).)))).......
UAGGAUUCGACGAUGGCG---------------------------------------- l=18 a=0 c
-----------------------------------CCAAUGUUGAACCCUAGAUCGC- l=22 a=0 c*
UAGGAUUCGACGAUGGCGA--------------------------------------- l=19 a=1 ma
----------------------------------UCCAAUGUUGAACCCUAGAUCGC- l=23 a=0 ma*

UAGGAUUCGACGAUGGCGA--------------------------------------- l=19 a=1 (ma)

mb-00011
ax-1001001
ku-01
ss-100010001000
fn-001
